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Armstrong, D., G. H. Lauster, B. L. Sanderson, D. B. Lewis and T. M. Frost. 2006. Jumping in: Within-lake processes and dynamics. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 187-213.

Arnott, S. E., J. J. Magnuson, S. I. Dodson and A. C. C. Colby. 2006 . Lakes as islands: Biodiversity, invasion and extinction. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 67-88.

Bade, D. L., M. L. Pace, J. J. Cole and S. R. Carpenter. 2006. Can algal photosynthetic inorganic carbon isotope fractionation be predicted in lakes using existing models? Aquatic Sciences 68 142-153.

Benson, B. J., P. Hanson, J. Chipman and C. Bowser. 2006. Breaking the data barrier: Research facilitation through information management. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 259-279.

Benson, B. J., J. J. Magnuson and T. K. Kratz. 2006. Synthetic summary and prospective. IN Long-Term Dynamics of Lakes in the Landscape:Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 325-334.

Biggs, R. 2006. A biodiversity intactness score for South Africa. South African Journal of Science (102): 277-283.

Brock, W. A. and S. R. Carpenter. 2006. Variance as a leading indicator of regime shift in ecosystem services. Ecology and Society 11 (2): [online].

Brose, U. et al. 2006. Consumer-resource body size relationships in natural food webs. Ecology 87 (10): 2411-2417.

Carpenter, S. R., R. DeFries, T. Dietz, H. A. Mooney, S. Polasky, W. V. Reid and R. J. Scholes. 2006. Millennium ecosystem assessment: research needs. Science 314 257-258.

Carpenter, S. R. and W. Brock. 2006. Rising variance: a leading indicator of ecological transition. Ecology Letters (9): 311-318, 17-26.

Carpenter, S. R. and C. Folke. 2006. Ecology for transformation. Trends in Ecology and Evolution 21 309-315.

Carpenter, S., R. Lathrop, P. Nowak, D. Armstrong, E. Bennett, K. Brasier, B. Kahn and T. Reed-Anderson. 2006. The ongoing experiment: the restoration of Lake Mendota . IN Long Term Dynamics of Lakes in the Landscape. Oxford University Press, 236-257.

Carpenter, S. R., E. M. Bennett and G. D. Peterson. 2006. Scenarios for ecosystem services: an overview. Ecology and Society 11 (1): art 29.

Chapin, F. S., M. Hoel, S. R. Carpenter, J. Lubchenco, B. H. Walker, T. V. Callaghan, C. Folke, S. A. Levin, K.-G. Mäler, C. Nilsson, S. Barrett, F. Berkes, A.-S. Crépin, K. Danell, T. Rosswall, D. Starrett, T. Xepapadeas and S. A. Zimov. 2006. Building resilience and adaptation to manage Arctic change. Ambio 35 (4): 198-202.

Cole, J. J., S. R. Carpenter, M. L. Pace, M. Van de Bogert, J. F. Kitchell and J. R. Hodgson. 2006. Differential support of lake food webs by three types of terrestrial organic carbon. Ecology Letters 9 (5): 558-568.

Dobson, A., D. M. Lodge, J. Alder, G. S. Cumming, J. Keymer, J. McGlade, H. Mooney, J. A. Rusak, O. Sala, V. Wolters, D. Wall and M. A. Xenopoulos. 2006. Habitat loss, trophic collapse and the decline of ecosystem services. Ecology 87 (8): 1915-1924.

Doyle, M. W. and E. H. Stanley. 2006. Exploring potential spatial-temporal links between fluvial geomorphology and nutrient-periphyton dynamics in streams using simulation models. Annals of the Association of American Geographers 96 (4): 687-698.

Dripps, W., R. J. Hunt and M. P. Anderson. 2006. Estimating recharge rates with analytic element models and parameter estimation. Ground Water 44 (1): 47-55.

Fredrick, K. C., M. W. Becker, L. S. Matott, A. Daw, K. Bandilla and D. M. Flewelling. 2006. Development of a numerical groundwater flow model using SRTM elevations. Hydrogeology Journal 15 (1): 171-181.

Frost, T. M., J. M. Fischer, P. L. Brezonik, M. J. Gonzalez, T. K. Kratz, C. J. Watras and K. E. Webster. 2006. The experimental acidification of Little Rock Lake . IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 168-186.

Frost, T. M., J. M. Fischer, J. L. Klug, S. E. Arnott and P. K. Montz. 2006. Trajectories of zooplankton recovery in the Little Rock Lake whole-lake acidification experiment. Ecological Applications 16 (1): 353-367. \

Giampietro, M., T. F. H. Allen and K. Mayumi. 2006. The epistemological predicament associated with purposive quantitative analysis. Ecological Complexity 3 307-327

Gunderson, L. H., S. R. Carpenter, C. Folke, P. Olsson and G. Peterson. 2006. Water RATs (Resilience, Adaptability, and Transformability) in Lake and Wetland Social-Ecological Systems. Ecology and Society  11 (1): p. 16.

Hamilton, D. P., T. K. Kratz, P. Arzberger and F.-P. Lin. 2006. Development of a global lake ecological observatory network. International Workshop for Lake Observing Systems, Shiga, Japan (Issue):19-24.

Hanson, P. C., S. R. Carpenter, D. E. Armstrong, E. H. Stanley and T. K. Kratz. 2006. Lake dissolved inorganic carbon and dissolved oxygen: changing drivers from days to decades. Ecological Monographs 76 (3): 343-363.

Hein, C. L., B. M. Roth, A. R. Ives and M. J. Vander Zanden. 2006. Fish predation and trapping for rusty crayfish (Orconectes rusticus) control: a whole lake experiment. Canadian Journal of Fisheries and Aquatic Sciences (63): 383-393.

Houser, J. N. 2006. Water color affects the stratification, surface temperature, heat content, and mean epilimnetic irradiance of small lakes. Canadian Journal of Fisheries and Aquatic Sciences 63 2447-2455.

Hrabik, T. R., O. P. Jensen, S. J. D. Martell, C. J. Walters and J. F. Kitchell. 2006. Diel vertical migration in the Lake Superior pelagic community. I. Changes in the vertical migration of coregonids in response to varying predation risk. Canadian Journal of Fisheries and Aquatic Sciences 63 2286-2295.

Huntington, T. G. 2006. Evidence for intensification of the global water cycle: Review and synthesis. Journal of Hydrology 319 83-95.

Jensen, O. P., T. R. Hrabik, S. J. D. Martell, C. J. Walters and J. F. Kitchell. 2006. Diel vertical migration in the Lake Superior pelagic community. II. Modeling trade-offs at an intermediate trophic level. Canadian Journal of Fisheries and Aquatic Sciences 63 2296-2307.

Johnson, P. T. J., E. R. Preu, D. R. Sutherland, J. M. Romansic, B. Han and A. R. Blaustein. 2006. Adding infection to injury: synergistic effects of predation and parasitism on amphibian malformations. Ecology 87 (9):2227-2235.

Johnson, P. T. J. 2006. Amphibian diversity: decimation by disease. Proceedings of the National Academy of Science 103 (9): 3011-3012.

Johnson, P. T. J., J. E. Longcore, D. E. Stanton, R. B. Carnegie, J. D. Shields and E. R. Preu. 2006. Chytrid infections of Daphnia pulicaria: development, ecology, pathology, and phylogeny of Polycaryum laeve. Freshwater Biology (51): 634-648.

Johnson, P. T. J., D. E. Stanton, E. R. Preu, K. J. Forshay and S. R. Carpenter. 2006. Dining on disease: How interactions between infection and environment affect predation risk. Ecology 87 (8): 1973-1980.

Jorgensen, B. S., D. Nowacek, R. Stedman, K. Brasier and D.Long. 2006. People in a forested lake district. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 214-235.

Keitt, T. H. and J. M. Fischer. 2006. Detection of scale-specific community dynamics using wavelets. Ecology 87 (11): 2895-2904.

Kent, A. D., S. E. Jones, G. H. Lauster, E. W. Triplett and K. D. McMahon. 2006. Experimental manipulations of microbial food web interactions in a humic lake: Shifting drivers of bacterial community structure. Environmental Microbiology 8 (8): 1448-1459.

Kitchell, J. F., S. J. D. Martell, C. J. Walters, O. P. Jensen, I. C. Kaplan, J. Watters, T. E. Essington and C. H. Boggs. 2006. Billfishes in an ecosystem context. Bulletin of Marine Science 79 (3): 669-682.

Kondolf, G. M., A. J. Boulton, S. O’Daniel, G. C. Poole, F. J. Rahel, E. H. Stanley, E. Wohl, A. Bang, J. Carlstrom, C. Cristoni, H. Huber, S. Koljonen, P. Louhi and K. Nakamura. 2006. Process-Based Ecological River Restoration: Visualizing Three-Dimensional Connectivity and Dynamic Vectors to Recover Lost Linkages. Ecology and Society 11 (2): 16 p. plus appendixes (25 p. total).

Kratz, T. K., K. E. Webster, J. L. Riera, D. B. Lewis and A. I. Pollard. 2006. Making Sense of the landscape: Geomorphic legacies and the landscape position of lakes. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 49-66.

Kratz, T. K., P. Arzberger, B. J. Benson, C.-Y. Chiu, K. Chiu, L. Ding, T. Fountain, D. Hamilton, P. C. Hanson, Y. H. Hu, F.-P. Lin, D. F. McMullen, S. Tilak and C. Wu. 2006. Towards a Global Lake Ecological Observatory Network. Publications of the Karelian Institute 145 51-63.

Lauster, G., P. C. Hanson and T. K. Kratz. 2006. Gross primary production and respiration differences among littoral and pelagic habitats in northern Wisconsin lakes. Canadian Journal of Fisheries and Aquatic Sciences (63): 1130-1141.

Lischka, S. A. and J. Magnuson. 2006. Timing and site selection of spawning in a landlocked population of rainbow smelt in Wisconsin. Environmental Biology of Fishes 76 (2-4): 413-418.

Lyons, J., P. Hanson and E. White. 2006. A photo-based computer system for identifying Wisconsin fishes. Fisheries 31 (6): 269-275.

Magnuson, J. J. 2006. More than just a view of the lake. Preserve! Friends of the Lakeshore Nature Preserve Newsletter 6 (1):1

Magnuson, John J., Timothy K. Kratz, and Barbara J. Benson. 2006. Long-term dynamics of lakes in the landscape: long-term ecological research on North Temperate Lakes. Oxford University Press, Oxford; New York

Magnuson, J. J., B. J. Benson, T. K. Kratz, D. E. Armstrong, C. J. Bowser, A. C. C. Colby, T. W. Meinke, P. K. Montz and K. E. Webster. 2006. Origin, operation, evolution and challenges. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 280-322.

Magnuson, J. J., T. K. Kratz and B. J. Benson. 2006. The challenge of time and space in ecology. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 3-16.

Magnuson, J. J., B. J. Benson, J. D. Lenters and D. M. Robertson. 2006. Climate driven variability and change. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 123-150.

Magnuson, J. J., T. K. Kratz, B. J. Benson and K. E. Webster. 2006. Coherent dynamics among lakes. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 89-106.

Marburg, A. E., M. G. Turner and T. K. Kratz. 2006. Natural and anthropogenic variation in coarse wood among and within lakes. Journal of Ecology 94 558-568.

McCarthy, J. M., C. L. Hein, J. D. Olden and M. J. Vander Zanden. 2006. Coupling long-term studies with meta-analysis to investigate impacts of invasive crayfish on zoobenthic communities. Freshwater Biology 51 224-235.

McClure, M. M., P. B. McIntyre and A. R. McCune. 2006. Notes on the natural diet and habitat of eight danionin fishes, including the zebrafish Danio rerio. Journal of Fish Biology 68 (2):553–570.

McIntyre, P. and A. Flecker. 2006. Rapid turnover of tissue nitrogen of primary consumers in tropical freshwaters. Oecologia 148 (1):12-21.

McIntyre, P. B., E. Michel and M. Olsgard. 2006. Top-down and Bottom-up Controls on Periphyton Biomass and Productivity in Lake Tanganyika. Limnology and Oceanography 51 (3):1514-1523

Mercado-Silva, N., J. D. Olden, J. T. Maxted, T. R. Hrabik and M. J. Vander Zanden. 2006. Forecasting the spread of invasive rainbow smelt in the Laurentian Great Lakes region of North America. Conservation Biology 20 (6): 1740-1749.

Mercado-Silva, N., J. Lyons, E. Diaz-Pardo, A. Gutierrez-Hernandez, C. P. Ornelas-Garcia, C. Pedroza-Lara and M. J. Vander Zanden. 2006. Long-term changes in the fish assemblage of the Laja River, Guanajuato, central Mexico. Aquatic Conservation: Marine and Freshwater Ecosystems 16 533-546.

Mercado-Silva, N., J. Lyons and S. Contreras-Balderas. 2006. Mexican fish-based indices of biotic integrity, their use in the conservation of freshwater resources. IN Studies of North American Desert Fishes in Honor of E.P. (Phil) Pister, Conservationist. Monterrey , Mexico : Universidad Autónoma de Nuevo León, 138-150.

Newton, R. J., A. D. Kent, E. W. Triplett and K. D. McMahon. 2006. Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes. Environmental Microbiology 8 (6): 956-970.

Olden, J. D., O. P. Jensen and M. J. Vander Zanden. 2006. Implications of long-term dynamics of fish and zooplankton communities for among-lake comparisons. Canadian Journal of Fisheries and Aquatic Sciences 63 1812-1821.

Olden, J. D., N. L. Poff and K. R. Bestgen. 2006. Life-history strategies predict fish invasions and extirpations in the Colorado River basin. Ecological Monographs 73 (1): 25-40.

Olden, J. D., J. M. McCarthy, J. T. Maxted, W. W. Fetzer and M. Jake. 2006. The rapid spread of rusty crayfish (Orconectes rusticus) with observations on native crayfish declines in Wisconsin (U.S.A.) over the past 130 years. Biological Invasions 8 1621-1628.

Olden, J. D., N. L. Poff and B. P. Bledsoe. 2006. Incorporating ecological knowledge into ecoinformatics: an example of modeling hierarchically structured aquatic communities with neural networks. Ecological Informatics 1 33-42.

Olden, J. D. and T. P. Rooney. 2006. On defining and quantifying biotic homogenization. Global Ecology and Biogeography 15 (2): 113-120.

Olsson, P., L. H. Gunderson, S. R. Carpenter, P. Ryan, L. Lebel, C. Folke and C. S. Holling. 2006. Shooting the rapids: navigating transitions to adaptive governance of social-ecological systems. Ecology and Society 11 (1 (art. 18)):1-21.

Orr, C. H. and E. H. Stanley. 2006. Vegetation development and restoration potential of drained reservoirs following dam removal in Wisconsin. River Research and Applications 22 281-295.

Orr, C. H., K. L. Rogers and E. H. Stanley. 2006. Channel morphology and P uptake following removal of a small dam. Journal of the North American Benthological Society 25 (3): 556-568.

Peckham, S. D., J. J. W. Chipman, T. M. Lillesand and S. I. Dodson. 2006. Alternate stable states and the shape of the lake trophic distribution. Hydrobiologia 571 (1): 401-407.

Peckman, S. D. and T. M. Lillesand. 2006. Detection of spatial and temporal trends in Wisconsin lake water clarity using landsat-derived estimates of secchi depth. Lake and Reservoir Management 22 331.

Provencher, B. and R. Moore. 2006. A discussion of “Using angler characteristics and attitudinal data to identify environmental preference classes: a latent-class model”. Environmental and Resource Economics 34 (1): 117-124.

Riera, J. L., T. K. Kratz and J. J. Magnuson. 2006. Generalization from intersite research. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 107-120.

Roth, B. M., C. L. Hein and M. J. Vander Zanden. 2006. Using bioenergetics and stable isotopes to assess the trophic role of rusty crayfish (Orconectes rusticus) in lake littoral zones. Canadian Journal of Fisheries and Aquatic Sciences (63): 335-344.

Sass, G. G., J. F. Kitchell, S. R. Carpenter, T. R. Hrabik, A. E. Marburg and M. G. Turner. 2006. Fish community and food web responses to a whole-lake removal of coarse woody habitat. Fisheries 31 321.

Sass, G. G., C. M. Gille, J. T. Hinke and J. F. Kitchell. 2006. Whole-lake influences of littoral structural complexity and prey body morphology on fish predator-prey interactions. Ecology of Freshwater Fish 15 301-308.

Singh, A., R. Nowak and P. Ramanathan. 2006. Active Learning for Adaptive Mobile Sensing Networks. International Conference on Information Processing in Sensor Networks, Nashville TN

Solomon, C. T., P. K. Weber, J. J. Cech Jr., B. L. Ingram, M. E. Conrad, M. V. Machavaram, A. R. Pogodina and R. L. Franklin. 2006. Experimental determination of the sources of otolith carbon and associated isotopic fractionation. Canadian Journal of Fisheries and Aquatic Sciences 63 79-89.

Stedman, R. C. 2006. Understanding place attachment among second home owners. American Behavioral Scientist 50 (2): 187-205.

Stedman, R. C. and R. B. Hammer. 2006. Environmental perception in a rapidly growing amenity-rich region: The effects of lakeshore development on perceived water quality in Vilas County, Wisconsin. Society and Natural Resources 19 137-151.

Tainter, J. A., T. F. H. Allen and T. W. Hoekstra. 2006. Energy transformations and post-normal science. Energy 31 (1): 44-58.

Tilak, S., K. Chiu, T. Fountain, T. K. Kratz, P. Arzberger and B. Benson. 2006. Towards Automated Instrument Management For Lake Monitoring Systems. 7th International Conference on HydroScience and Engineering (ICHE),

Turner, M. G. 2005. Landscape ecology in North America: past, present and future. Ecology 86 (8): 1967-1974.

Turner, M. G. 2005. Landscape ecology: what is the state of the science? Annual Review of Ecology, Evolution and Systematics 36 319-344.

Vander Zanden, M. J., S. Chandra, S.-K. Park, Y. Vadeboncoeur and C. R. Goldman. 2006. Efficiencies of benthic and pelagic trophic pathways in a subalpine lake. Canadian Journal of Fisheries and Aquatic Sciences 63 2608-2620.

Walker, B. H., L. H. Gunderson, A. Kinzig, C. Folke, S. R. Carpenter and L. Schultz. 2006. A handful of heuristics and some propositions for understanding resilience in social-ecological systems. Ecology and Society 11 (1 (art. 13)): 1-15.

Watras, C. J., K. A. Morrison, O. Regnell and T. K. Kratz. 2006. The methylmercury cycle in Little Rock Lake during experimental acidification and recovery. Limnology and Oceanography 51 257-270.

Webster, K. E., C. J. Bowser, M. P. Anderson and J. D. Lenters. 2006. Understanding the lake-groundwater system: Just follow the water. IN Long-Term Dynamics of Lakes in the Landscape: Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 19-48.

White, E. P., P. B. Adler, W. K. Lauenroth, R. A. Gill, D. Greenberg, D. M. Kaufman, A. Rassweiler, J. A. Rusak, M. D. Smith, J. R. Steinbeck, R. B. Waide and J. Yao. 2006. A comparison of the species-time relationship across ecosystems and taxonomic groups. Oikos (112): 185-195.

Willis, T. V. and J. J. Magnuson. 2006. Response of fish communities in five north temperate lakes to exotic species and climate. Limnology and Oceanography 51 (6): 2808-2820.

Wilson, K. A. and T. R. Hrabik. 2006. Ecological change and exotic invaders. IN Long-Term Dynamics of Lakes in the Landscape:Long-Term Ecological Research on North Temperate Lakes. Oxford University Press, 151-167.

Yuan, H. and C. H. Wu. 2006. Fully nonhydrostatic modeling of surface waves. Journal of Mechanical Engineering 132 (4): 447-456.